The jeep stroker is by definition a 4.0 block with a 4.2 crank(or 232 crank for the newer "mini" stroker) there is not a way to use a 258 crate engine for a stroker as you couldn't bore a 258 that far unless it's a very rare block, the cylinder walls aren't going to take it. On that page you referenced (that's Dino, or Cheromaniac on Jeepstrokers.com) you could build a "poor man's" stroker.
I have one running 4.6 in a ZJ and am concurrently building 2 more for my 98 Ex-USFS XJ and my 82 SX/4 I'm using the heavy 12 cwt crank & short rods for the XJ one(66 lb. crank; more inertia, better for crawling), and a light 4 cwt crank & long rods with KB 944 pistons for the SX4 one(46 lb. crank faster spin up & better throttle response in a car for running around the dirt roads etc..).
A minimalist approach would be to take your 258 crank & have it ground(if needed, but often they can be re-used with just a re-polish), rebuild the 258 rods, then get a good running 4.0 that has good compression and pull it down, substitute the 258 crank & rods for the 4.0 ones using the 4.0 pistons(back into the same holes) have the cylinders re-honed/just break the glaze(you could even do this yourself with a cylinder hone & a power drill). Put it all back together with new gaskets & possibly new bottom bearings as needed to match your 258 crank. I personally would rather build from the ground up but the outlined method will work & get you to around 240 HP. If for some reason you want to keep the Carb you could still do that however you'd need to convert to an electric pump as the 4.0 block has no provision for mounting the manual pump. If your 4.0 donor was sold due to a spun bearing(a great finds as it'll be cheap & you are going to be replaceing the crank & rods anyway) then you should be able to get it for around $200 which should put you all in at $500-$700 depending on need for bearings & how much machine work you decide to do.
By the way that scenario where you just break the glaze on the cylinder walls so that the rings will re-seat will actually give you a 4.5(.020-.030 over is 4.6 and .060 over yields a 4.7)