The weak part of the Iron Duke is the crank. Its designed for economy, which is right at 80 HP. The racing versions of the Iron Duke used a "Super Duty" crank that was much more robust. Years ago they sold quite a few of these to Pontiac Fiero guys, along with other Iron Duke upgrades. They are extremely rare and they were extremely expensive back then.
That same crank, however, is a dime a dozen today. Mercruiser purchased the rights to make the original Iron Duke casting, originally made by Chevy in only 1977 and 1978. For marine duty they also got the rights to make a super duty crank. Essentially every inboard boat between 16 and 20 feet that has been made in the last thirty years has that Mercrusier engine. I purchased three Mercruiser engines so far for $100 a piece. They're perfect for installation in an Eagle. The Merc Iron Dukes are still in production today.
The AMC Iron Duke, made in 1980 through early '83, is actually a 1979 Chevy engine. In 1980 Chevy changed the casting dramatically and abandoned the engine, and that's when AMC picked it up to use until their own 4 cylinder development was completed. There are several major differences between the 1978 and 1979 Iron Dukes, but the engine mounts and the bellhousing are the same. That's not true of the 1980 to 1992 Chevy Iron Dukes.
The early Merc Iron Duke 2.5L had the same size pistons as our AMC Iron Dukes. They were 120 HP motors. The later ones were factory overbored and stroked to 3.0L. Those were rated to 140 HP. The Merc 2.5L and 3.0L will bolt into an Eagle directly. There is one hole on the passenger side mount that needs to be elongated, but its minor. You also must take the Merc oil pan off and discard it because it is shaped dramatically different. The AMC Iron Duke oil pan and oil pickup will work.
There is a Mercruiser 3.7L four cylinder engine out there as well. That is often called an Iron Duke, but that is misleading. That engine was created by Mercruiser to be a directly interchangeable inboard engine with their 3.0L engine. They actually made an Aluminum block using the iron casting as a starting point. That means the bellhousing pattern is the same and the engine mounts should be the same. Instead of Chevy Iron Duke internals, however, they use Ford pistons, connecting rods, and a modified Ford V8 head. The Mercruiser aluminum block 3.7L engines were rated up to 190 hp. They would be a comparatively easy swap, indeed much easier than a Chevy Iron Duke would be. I have avoided this engine for one reason. The oil pan isn't an Iron Duke oil pan. It uses the Ford gaskets. That means you can't use the Eagle oil pan when converting it to car use. In order to install on in an Eagle you will need to make your own custom oil pan and oil pickup tube.
The Merc Iron Dukes are non cross flow heads just like the '77 and '78 Chevy engines they are based on. That means that the carb is on the driver's side of the engine along with the exhaust. Our AMC engines, based on the '79 casting, is a cross flow head. The crossflow head from your Eagle might work, but you will not be able to use the intake manifold. The difference between a '78 casting and a '79 casting (that the AMC is based of) is that the distributor was moved further back to make room for the intake. You'll need to make a custom intake if you use your Eagle head on a Merc block. Alternatively you could use the Merc crank in your Eagle block, but then you can't take advantage of the 3.0L displacement and larger stroke that the Merc block has.
There is another head option. The racing Iron Dukes usually modify a Small block Chevy head a very small amount and use that. It dang near bolts up as is. If you look closely, the Iron Duke four cylinder actually uses a Chevy Small Block pattern for the valve cover. The Head Gasket pattern and water jackets are dang near identical as well. Those racing engines use the SBC heads because of the larger valves and performance upgrade possibilities. They then also use custom headers for both intake and exhaust.
In my case I have a '77 Monza Iron Duke already installed in my Kammback from a previous owner, so I have that intake and exhaust ready to bolt on to the Merc motor. I doubt you'll be able to find one but that is another possibility for a bolt on swap.