The EGR valves on these cars will NOT hold vacuum, even when they are working correctly if the engine is off or at idle. This is because they EGR valves on Eagle are the Positive Back Pressure type and will not hold vacuum until exhaust back pressure is high enough. While the EGR is not needed, there is really no reason to delete as it keeps combustion temps down, which can help prevent pinging, and can also increase the mpg a little, and keeps the air a little cleaner.
As for the timing, I was thinking ignition module as well. Also, is it possible the trigger wheel in the distributor could be really dirty with grease or have a broken tooth?