Here's what the deal was.
Took off the Slave Cyl and Master Cyl. Found that when I did the reservoir didnt empty itself. The rubber hose leading to the Master Cyl had rotted and the inner layer clogged the hose. Easy fix. I installed a brand new Master Cyl when I threw it all together and it didnt work properly, or so I thought.
The pedal was still very soft. I took the new master cyl out, put the old one back in and still nothing.
The problem ended up being because I couldnt bleed the thing properly. Despite trying over and over and over, it wouldnt bleed well enough to shift well.
I ended up bleeding as you would with brakes. Pump it up, hold it, open and close the bleeder, repeat. I did that until no more air came out, and it still wasnt good enough.
I then pulled the rod all the way into the Slave Cyl and openned the bleeder while the person in the car had the pedal UP.
Once I yelled that the bleeder was wide open, the person in the car slowly lowered the pedal.
Once the pedal hit the floor, I close the bleeder and allowed the rod to return all the way back to it's usual position as the pedal was slowly raised.
After the initial fluid loss, almost no fluid came out. But the pressure afterwards was good.
I'm going to try again tomorrow, seeing as I never actually saw fluid come out, and I was only holding back the rod with my hand. Ill try getting a ratchet strap on the fork and keeping it in place this weekend and seeing how that goes.
Hope this helps someone else.