The stock 4.0 tubular headers are pretty good. Somewhere here is a writeup about gusseting some connections to prevent it from cracking, and you have to do some turns around the front diff and build a new bracket, but that's not difficult or complicated stuff.
If you have a good exhaust guy, or can spend some time welding pieces yourself, I'd go 2.5 from the manifold back to the cat and muffler, then go down to 2.25 from there on out to save a few dollars. You could even order stock pieces from NAPA for the back and make life easy. You'll never notice the neck down after the muffler, and probably not even if you did it between the cat and muffler.